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Geometry Optimization (relax) ​

Performs steepest-descent structural relaxation to find local minimum energy conformations.

Usage ​

bash
atoma relax <TARGET> [OPTIONS]

Options ​

  • --max-steps <STEPS>: Maximum minimization iterations (default: 500)
  • --tolerance <TOL>: Convergence gradient force tolerance in $\text{eV}/\text{\AA}$ (default: 1e-4)
  • -o, --output <PATH>: Destination path to save relaxed atomic coordinates in .xyz format

Example Output ​

text
============================================================
 Atoma Headless Molecular Relaxation (Steepest Descent)
============================================================
 Target:             Water (H2O) (H2O)
 Initial Energy U0:  0.004608 eV
 Max Steps:          500
 Gradient Tolerance: 0.000100 eV/A
------------------------------------------------------------
 Optimization Status: CONVERGED
 Iterations Taken:    32
 Final Energy U_min:  0.000192 eV
 Energy Delta ΔU:     -0.004416 eV (-95.83%)
 Final Max Force:     0.057346 eV/A
============================================================

Released under the MIT License.